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for
rs3803662
(snp)
Summary
General Info
Macaque
C
Human
C
|
T
Chimp
C
Mouse
C
Rat
C
Type:
snp
Organism:
Homo sapiens
Alleles:
C
|
T
Chromosomal Location:
chr 16
:
51143842 (build 36.3)
Strand:
-
Flanking Sequence:
ATAGCTGTC [
C
|
T
] CTTAGCGAAGA
Update Date:
May 24 2008
Validated:
YES
Associated Gene(s):
CASC16
Related URLs:
NCBI dbSNP
Associated Genes
Population
Correlated SNP
CASC16 (exon)
Transcript
CDS Change
Protein
Mutation Class
AA Change
XM_931757
T153C
XP_936850
Synonymous
S51S
Population Frequency
Population
Alleles
Genotypes
African ancestry in Southwest, USA (ASW)
T
52%
C
48%
T/T
25%
T
/C
55%
C/C
21%
Utah residents with Northern and Western European ancestry from the CEPH collection (CEU)
T
25%
C
75%
T/T
7%
T
/C
35%
C/C
57%
Han Chinese in Beijing, China (CHB)
T
69%
C
32%
T/T
48%
T
/C
42%
C/C
11%
Chinese in Metropolitan Denver, Colorado (CHD)
T
64%
C
36%
T/T
41%
T
/C
46%
C/C
13%
Gujarati Indians in Houston, Texas (GIH)
T
27%
C
73%
T/T
9%
T
/C
35%
C/C
56%
Japanese in Tokyo, Japan (JPT)
T
60%
C
40%
T/T
37%
T
/C
45%
C/C
18%
Luhya in Webuye, Kenya (LWK)
T
57%
C
43%
T/T
34%
T
/C
44%
C/C
21%
Mexican ancestry in Los Angeles, California (MEX)
T
39%
C
61%
T/T
14%
T
/C
50%
C/C
36%
Maasai in Kinyawa, Kenya (MKK)
T
56%
C
44%
T/T
32%
T
/C
49%
C/C
20%
Toscans in Italy (TSI)
T
31%
C
69%
T/T
7%
T
/C
48%
C/C
46%
Yoruba in Ibadan, Nigeria (YRI)
T
54%
C
46%
T/T
29%
T
/C
50%
C/C
21%
Global or other
T
49%
C
51%
SNPs correlated to rs3803662 for population
Global
African ancestry in Southwest, USA
Chinese in Metropolitan Denver, Colorado
Gujarati Indians in Houston, Texas
Han Chinese in Beijing, China
Japanese in Tokyo, Japan
Luhya in Webuye, Kenya
Maasai in Kinyawa, Kenya
Mexican ancestry in Los Angeles, California
Toscans in Italy
Utah residents with Northern and Western European ancestry
Yoruba in Ibadan, Nigeria
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