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for
rs7766485;jsessionid=6B0CF48AEF4B6A9692286489906C0AC2
(snp)
Summary
General Info
Macaque
T
Human
C
|
T
Chimp
T
Mouse
-
Rat
-
Type:
snp
Organism:
Homo sapiens
Alleles:
C
|
T
Chromosomal Location:
chr 6
:
86320274 (build 36.3)
Strand:
+
Flanking Sequence:
ACTGAAAAG [
C
|
T
] CATAATGTAAT
Update Date:
Apr 04 2008
Validated:
YES
Associated Gene(s):
SNX14
Related URLs:
NCBI dbSNP
Associated Genes
Population
Correlated SNP
SNX14 (intron)
Transcript
CDS Change
Protein
Mutation Class
AA Change
-
-
-
-
-
Population Frequency
Population
Alleles
Genotypes
African ancestry in Southwest, USA (ASW)
T
64%
C
36%
T/T
43%
C
/T
42%
C/C
15%
Utah residents with Northern and Western European ancestry from the CEPH collection (CEU)
T
39%
C
61%
T/T
10%
C
/T
59%
C/C
31%
Han Chinese in Beijing, China (CHB)
T
58%
C
42%
T/T
35%
C
/T
46%
C/C
19%
Chinese in Metropolitan Denver, Colorado (CHD)
T
67%
C
33%
T/T
45%
C
/T
43%
C/C
12%
Gujarati Indians in Houston, Texas (GIH)
T
52%
C
48%
T/T
28%
C
/T
47%
C/C
25%
Japanese in Tokyo, Japan (JPT)
T
68%
C
32%
T/T
48%
C
/T
41%
C/C
12%
Luhya in Webuye, Kenya (LWK)
T
80%
C
20%
T/T
64%
C
/T
33%
C/C
3%
Mexican ancestry in Los Angeles, California (MEX)
T
36%
C
64%
T/T
16%
C
/T
40%
C/C
44%
Maasai in Kinyawa, Kenya (MKK)
T
69%
C
31%
T/T
46%
C
/T
46%
C/C
8%
Toscans in Italy (TSI)
T
45%
C
55%
T/T
22%
C
/T
47%
C/C
31%
Yoruba in Ibadan, Nigeria (YRI)
T
78%
C
22%
T/T
61%
C
/T
34%
C/C
5%
Global or other
T
61%
C
39%
SNPs correlated to rs7766485;jsessionid=6B0CF48AEF4B6A9692286489906C0AC2 for population
Global
African ancestry in Southwest, USA
Chinese in Metropolitan Denver, Colorado
Gujarati Indians in Houston, Texas
Han Chinese in Beijing, China
Japanese in Tokyo, Japan
Luhya in Webuye, Kenya
Maasai in Kinyawa, Kenya
Mexican ancestry in Los Angeles, California
Toscans in Italy
Utah residents with Northern and Western European ancestry
Yoruba in Ibadan, Nigeria
Clear Filter
SNP
r
2
Maximum Recombination Rate
Distance (bp)
Genetic Distance (cM)
rs2758848
0.974
0.3546
84050.0
0.0019
rs9450285
0.949
2.0619
55459.0
0.0059
rs4431401
0.869
2.0619
74035.0
0.0082
rs1059307
0.769
0.5583
124333.0
0.0038
rs9444352
0.716
0.0174
6020.0
0.0
rs1173416
0.681
0.8436
152258.0
0.006
rs10944128
0.639
2.0619
82823.0
0.0096
rs6454472
0.609
2.0619
39502.0
0.0037
rs2842611
0.558
0.3062
38479.0
0.0011
rs2842600
0.528
0.3062
62077.0
0.0011
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