Spontaneous rDNA copy number variation modulates Sir2 levels and epigenetic gene silencing.

Agnès H Michel, Benoît Kornmann, Karine Dubrana, David Shore

Department of Molecular Biology and NCCR Program "Frontiers in Genetics", University of Geneva, Sciences III, 30, quai Ernest-Ansermet, CH-1211, Geneva 4, Switzerland.

Genes & development 2005 May 15

filter terms:

We show that in budding yeast large rDNA deletions arise frequently and cause an increase in telomeric and mating-type gene silencing proportional to repeat loss. Paradoxically, this increase in silencing is correlated with a highly specific down-regulation of SIR2, which encodes a deacetylase enzyme required for silencing. These apparently conflicting observations suggest that a large nucleolar pool of Sir2 is released upon rDNA loss and made available for telomeric and HM silencing, as well as down-regulation of SIR2 itself. Indeed, we present evidence for a reduction in the fraction of Sir2 colocalizing with the nucleolar marker Nop1, and for SIR2 autoregulation. Despite a decrease in the fraction of nucleolar Sir2, and in overall Sir2 protein levels, short rDNA strains display normal rDNA silencing and a lifespan indistinguishable from wild type. These observations reveal an unexpectedly large clonal variation in rDNA cluster size and point to the existence of a novel regulatory circuit, sensitive to rDNA copy number, that balances nucleolar and nonnucleolar pools of Sir2 protein.

Citation

Agnès H Michel, Benoît Kornmann, Karine Dubrana, David Shore. Spontaneous rDNA copy number variation modulates Sir2 levels and epigenetic gene silencing. Genes & development. 2005 May 15;19(10):1199-210