Correlation of gene and protein structures in the FXYD family proteins.

Carla M Franzin, Jinghua Yu, Khang Thai, Jungyuen Choi, Francesca M Marassi

The Burnham Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA.

Journal of molecular biology 2005 Dec 9

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The FXYD family proteins are auxiliary subunits of the Na,K-ATPase, expressed primarily in tissues that specialize in fluid or solute transport, or that are electrically excitable. These proteins range in size from about 60 to 160 amino acid residues, and share a core homology of 35 amino acid residues in and around a single transmembrane segment. Despite their relatively small sizes, they are all encoded by genes with six to nine small exons. We show that the helical secondary structures of three FXYD family members, FXYD1, FXYD3, and FXYD4, determined in micelles by NMR spectroscopy, reflect the structures of their corresponding genes. The coincidence of helical regions, and connecting segments, with the positions of intron-exon junctions in the genes, support the hypothesis that the FXYD proteins may have been assembled from discrete structural modules through exon shuffling.

Citation

Carla M Franzin, Jinghua Yu, Khang Thai, Jungyuen Choi, Francesca M Marassi. Correlation of gene and protein structures in the FXYD family proteins. Journal of molecular biology. 2005 Dec 9;354(4):743-50