A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate.

Tyler D Ames, Dmitry A Rodionov, Zasha Weinberg, Ronald R Breaker

Department of Molecular, Cellular and Developmental Biology, Yale University, Box 208103, New Haven, CT 06520-8103, USA.

Chemistry & biology 2010 Jul 30

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Comparative sequence analyses of bacterial genomes are revealing many structured RNA motifs that function as metabolite-binding riboswitches. We have identified an RNA motif frequently positioned in the 5' UTRs of folate transport and biosynthesis genes in Firmicute genomes. Biochemical experiments confirm that representatives of this new-found RNA class selectively bind derivatives of the vitamin folate, including di- and tetrahydrofolate coenzymes. In addition, representatives of this aptamer class occasionally reside upstream of RNA structures that are predicted to control translation initiation in response to ligand binding. These findings expand the number of coenzymes that are directly sensed by RNA and reveal possible riboswitch-controlled regulons that respond to changes in single-carbon metabolism. 2010 Elsevier Ltd. All rights reserved.

Citation

Tyler D Ames, Dmitry A Rodionov, Zasha Weinberg, Ronald R Breaker. A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate. Chemistry & biology. 2010 Jul 30;17(7):681-5