Identification of a novel allosteric binding site in the CXCR2 chemokine receptor.

Petra de Kruijf, Herman D Lim, Luc Roumen, Véronique A Renjaän, Jiuqiao Zhao, Maria L Webb, Douglas S Auld, Jac C H M Wijkmans, Guido J R Zaman, Martine J Smit, Chris de Graaf, Rob Leurs

Leiden/Amsterdam Center for Drug Research, Division of Medicinal Chemistry, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.

Molecular pharmacology 2011 Dec

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We have shown previously that different chemical classes of small-molecule antagonists of the human chemokine CXCR2 receptor interact with distinct binding sites of the receptor. Although an intracellular binding site for diarylurea CXCR2 antagonists, such as N-(2-bromophenyl)-N'-(7-cyano-1H-benzotriazol-4-yl)urea (SB265610), and thiazolopyrimidine compounds was recently mapped by mutagenesis studies, we now report on an imidazolylpyrimidine antagonist binding pocket in the transmembrane domain of CXCR2. Using different CXCR2 orthologs, chimeric proteins, site-directed mutagenesis, and in silico modeling, we have elucidated the binding mode of this antagonist. Our in silico-guided mutagenesis studies indicate that the ligand binding cavity for imidazolylpyrimidine compounds in CXCR2 is located between transmembrane (TM) helices 3 (Phe130(3.36)), 5 (Ser217(5.44), Phe220(5.47)), and 6 (Asn268(6.52), Leu271(6.55)) and suggest that these antagonists enter CXCR2 via the TM5-TM6 interface. It is noteworthy that the same interface is postulated as the ligand entry channel in the opsin receptor and is occupied by lipid molecules in the recently solved crystal structure of the CXCR4 chemokine receptor, suggesting a general ligand entrance mechanism for nonpolar ligands to G protein-coupled receptors. The identification of a novel allosteric binding cavity in the TM domain of CXCR2, in addition to the previously identified intracellular binding site, shows the diversity in ligand recognition mechanisms by this receptor and offers new opportunities for the structure-based design of small allosteric modulators of CXCR2 in the future.

Citation

Petra de Kruijf, Herman D Lim, Luc Roumen, Véronique A Renjaän, Jiuqiao Zhao, Maria L Webb, Douglas S Auld, Jac C H M Wijkmans, Guido J R Zaman, Martine J Smit, Chris de Graaf, Rob Leurs. Identification of a novel allosteric binding site in the CXCR2 chemokine receptor. Molecular pharmacology. 2011 Dec;80(6):1108-18