A historical perspective for the catalytic reaction mechanism of glycosidase; so as to bring about breakthrough in confusing situation.

Seiya Chiba

Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan. schiba@abs.agr.hokudai.ac.jp

Bioscience, biotechnology, and biochemistry 2012

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Various catalytic reaction models have been proposed as the reaction mechanisms of glycosidases, but a reasonable and unitary model capable of interpreting both "inverting" and "retaining" glycosidase reactions remains to be established. As for the models proposed to date, the nucleophilic displacement mechanism and the oxocarbenium ion intermediate mechanism are widely known, but recently the former is widely accepted, and so the general tendency of world opinion appears to favor it. This reaction model, however, is considered to comprise some inconsistencies that cannot be neglected from the viewpoint of reactivity in organic chemistry. While the nucleophilic displacement mechanism is often applied to reactions of glycosidases, it appears unlikely that such reactions actually occur. This review argues that the oxocarbenium ion intermediate reaction mechanism is more rational than the nucleophilic displacement reaction mechanism, as the action mode of glycosidases and related enzymes.

Citation

Seiya Chiba. A historical perspective for the catalytic reaction mechanism of glycosidase; so as to bring about breakthrough in confusing situation. Bioscience, biotechnology, and biochemistry. 2012;76(2):215-31