MycoRRdb: a database of computationally identified regulatory regions within intergenic sequences in mycobacterial genomes.

Mohit Midha, Nirmal K Prasad, Vaibhav Vindal

PloS one 2012

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The identification of regulatory regions for a gene is an important step towards deciphering the gene regulation. Regulatory regions tend to be conserved under evolution that facilitates the application of comparative genomics to identify such regions. The present study is an attempt to make use of this attribute to identify regulatory regions in the Mycobacterium species followed by the development of a database, MycoRRdb. It consist the regulatory regions identified within the intergenic distances of 25 mycobacterial species. MycoRRdb allows to retrieve the identified intergenic regulatory elements in the mycobacterial genomes. In addition to the predicted motifs, it also allows user to retrieve the Reciprocal Best BLAST Hits across the mycobacterial genomes. It is a useful resource to understand the transcriptional regulatory mechanism of mycobacterial species. This database is first of its kind which specifically addresses cis-regulatory regions and also comprehensive to the mycobacterial species. Database URL: http://mycorrdb.uohbif.in.

Citation

Mohit Midha, Nirmal K Prasad, Vaibhav Vindal. MycoRRdb: a database of computationally identified regulatory regions within intergenic sequences in mycobacterial genomes. PloS one. 2012;7(4):e36094