Bioclipse-R: integrating management and visualization of life science data with statistical analysis.

Ola Spjuth, Valentin Georgiev, Lars Carlsson, Jonathan Alvarsson, Arvid Berg, Egon Willighagen, Jarl E S Wikberg, Martin Eklund

Bioinformatics (Oxford, England) 2013 Jan 15

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Bioclipse, a graphical workbench for the life sciences, provides functionality for managing and visualizing life science data. We introduce Bioclipse-R, which integrates Bioclipse and the statistical programming language R. The synergy between Bioclipse and R is demonstrated by the construction of a decision support system for anticancer drug screening and mutagenicity prediction, which shows how Bioclipse-R can be used to perform complex tasks from within a single software system. Bioclipse-R is implemented as a set of Java plug-ins for Bioclipse based on the R-package rj. Source code and binary packages are available from https://github.com/bioclipse and http://www.bioclipse.net/bioclipse-r, respectively. martin.eklund@farmbio.uu.se Supplementary data are available at Bioinformatics online.

Citation

Ola Spjuth, Valentin Georgiev, Lars Carlsson, Jonathan Alvarsson, Arvid Berg, Egon Willighagen, Jarl E S Wikberg, Martin Eklund. Bioclipse-R: integrating management and visualization of life science data with statistical analysis. Bioinformatics (Oxford, England). 2013 Jan 15;29(2):286-9