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Bioclipse, a graphical workbench for the life sciences, provides functionality for managing and visualizing life science data. We introduce Bioclipse-R, which integrates Bioclipse and the statistical programming language R. The synergy between Bioclipse and R is demonstrated by the construction of a decision support system for anticancer drug screening and mutagenicity prediction, which shows how Bioclipse-R can be used to perform complex tasks from within a single software system. Availability and implementation: Bioclipse-R is implemented as a set of Java plug-ins for Bioclipse based on the R-package rj. Source code and binary packages are available from and, respectively. Supplementary data are available at Bioinformatics online.


Ola Spjuth, Valentin Georgiev, Lars Carlsson, Jonathan Alvarsson, Arvid Berg, Egon Willighagen, Jarl E S Wikberg, Martin Eklund. Bioclipse-R: integrating management and visualization of life science data with statistical analysis. Bioinformatics (Oxford, England). 2013 Jan 15;29(2):286-9

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PMID: 23178637

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