A study on optimization of pat gene expression cassette for maize transformation.

Elumalai Sivamani, Samson Nalapalli, Anna Prairie, David Bradley, Lee Richbourg, Tim Strebe, Tara Liebler, Daolong Wang, Qiudeng Que

Molecular biology reports 2019 Jun

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Phosphinothricin acetyltransferase gene (pat) is an important selectable marker and also a key herbicide trait gene in several commercial products. In maize, the transformation frequency (TF) using pat as a selectable marker is the lowest among the commonly used marker options including epsps, pmi or ppo. Low pat transformation efficiency can become a major bottleneck in our ability to efficiently produce large numbers of events, especially for large molecular stack vectors with multiple trait gene cassettes. The root cause of the lower efficiency of pat in maize is not well understood and it is possible that the causes are multifaceted, including maize genotype, pat marker cassette, trait gene combinations and selection system. In this work we have identified a new variant of pat gene through codon optimization that consistently produced a higher transformation frequency (> 2x) than an old version of the pat gene that has codons optimized for expression in dicot plants. The level of PAT protein in all 16 constructs was also found multifold higher (up to 40 fold) over that of the controls. All of the T0 low copy transgenic plants generated from the 16 different constructs showed excellent tolerance to ammonium glufosinate herbicide spray tests at 4x and 8x recommended field application rates (1x = 595 g active ingredient (ai)/hectare of ammonium glufosinate) in the greenhouse.

Citation

Elumalai Sivamani, Samson Nalapalli, Anna Prairie, David Bradley, Lee Richbourg, Tim Strebe, Tara Liebler, Daolong Wang, Qiudeng Que. A study on optimization of pat gene expression cassette for maize transformation. Molecular biology reports. 2019 Jun;46(3):3009-3017