Light-Activatable TET-Dioxygenases Reveal Dynamics of 5-Methylcytosine Oxidation and Transcriptome Reorganization.

Shubhendu Palei, Benjamin Buchmuller, Jan Wolffgramm, Álvaro Muñoz-Lopez, Sascha Jung, Paul Czodrowski, Daniel Summerer

Journal of the American Chemical Society 2020 Apr 22

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Ten-eleven-translocation (TET) dioxygenases catalyze the oxidation of 5-methylcytosine (5mC), the central epigenetic regulator of mammalian DNA. This activity dynamically reshapes the epigenome and transcriptome by depositing oxidized 5mC derivatives and initiating active DNA demethylation. However, studying this dynamic is hampered by the inability to selectively activate individual TETs with temporal control in cells. We report activation of TETs in mammalian cells by incorporation of genetically encoded 4,5-dimethoxy-2-nitrobenzyl-l-serine as a transient active-site block, and its subsequent deprotection with light. Our approach enables precise insights into the impact of cancer-associated TET2 mutations on the kinetics of TET2 catalysis in vivo, and allows time-resolved monitoring of target gene activation and transcriptome reorganization. This sets a basis for dissecting the order and kinetics of chromatin-associated events triggered by TET catalysis, ranging from DNA demethylation to chromatin and transcription regulation.

Citation

Shubhendu Palei, Benjamin Buchmuller, Jan Wolffgramm, Álvaro Muñoz-Lopez, Sascha Jung, Paul Czodrowski, Daniel Summerer. Light-Activatable TET-Dioxygenases Reveal Dynamics of 5-Methylcytosine Oxidation and Transcriptome Reorganization. Journal of the American Chemical Society. 2020 Apr 22;142(16):7289-7294