Progress Curve Analysis of the one stage chromogenic assay for ecarin.

Lambro A Johnson, John de Jersey, Paul P Masci, Kong-Nan Zhao, Nigel C Bennett, Goce Dimeski, Michael Grant, Martin F Lavin

Analytical biochemistry 2020 Nov 01

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Snake venom prothrombin activators such as Ecarin are readily assayed by continuous spectrophotometric monitoring of p-nitroaniline production in a one step assay containing prothrombin and a p-nitroanilide peptide substrate for thrombin. The coupled reactions result in accelerating p-nitroaniline (pNA) production over the course of the assay giving non-linear progress curves, from which initial velocities are not readily obtained. Most studies therefore resort to approximate estimates of activity, based on the absorbance reached at an arbitrary time. A simple kinetic analysis of the coupled reactions shows that the early points of such curves should be fitted by second order polynomials, representing the accelerating reaction rate in μmol pNA/min/min. The first derivative of the polynomial then gives the increasing velocity of pNA production in μmol pNA/min over the time course of the assay. We demonstrate here that, with the substrate S2238, these rates can be converted to absolute thrombin concentrations using the Michaelis-Menten equation, substituted with values for kcat and Km. These thrombin concentrations increase linearly over the time course of the assay allowing the activity to be expressed in units, defined as μmol product/min, most commonly used to report enzyme activity. Copyright © 2020 Elsevier Inc. All rights reserved.

Citation

Lambro A Johnson, John de Jersey, Paul P Masci, Kong-Nan Zhao, Nigel C Bennett, Goce Dimeski, Michael Grant, Martin F Lavin. Progress Curve Analysis of the one stage chromogenic assay for ecarin. Analytical biochemistry. 2020 Nov 01;608:113907