Genome-wide survey of the GATA gene family in camptothecin-producing plant Ophiorrhiza pumila.

Min Shi, Qikai Huang, Yao Wang, Can Wang, Ruiyan Zhu, Siwei Zhang, Guoyin Kai

BMC genomics 2022 Apr 03

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Ophiorrhiza pumila (Rubiaceae) is capable of producing camptothecin (CPT), one monoterpene indole alkaloid extensively employed in the treatment of multiple cancers. Transcription factors (TFs) GATA are a group of transcription regulators involved in plant development and metabolism, and show the feature of binding to the GATA motif within the promoters of target genes. However, GATA TFs have not been characterized in O. pumila. In this study, a total of 18 GATA genes classified into four subfamilies were identified, which randomly distributed on 11 chromosomes of O. pumila. Synteny analysis of GATA genes between O. pumila and other plant species such as Arabidopsis thaliana, Oryza sativa, Glycine max, Solanum lycopersicum, Vitis vinifera, and Catharanthus roseus genomes were analyzed. Tissue expression pattern revealed that OpGATA1 and OpGATA18 were found to be correlated with ASA, MK, CPR and GPPS, which were highly expressed in leaves. OpGATA7, showed high expression in roots as most of the CPT biosynthetic pathway genes did, suggesting that these OpGATAs may be potential candidates regulating CPT biosynthesis in O. pumila. In this study, we systematically analyzed the OpGATA TFs, and provided insights into the involvement of OpGATA TFs from O. pumila in CPT biosynthesis. © 2022. The Author(s).

Citation

Min Shi, Qikai Huang, Yao Wang, Can Wang, Ruiyan Zhu, Siwei Zhang, Guoyin Kai. Genome-wide survey of the GATA gene family in camptothecin-producing plant Ophiorrhiza pumila. BMC genomics. 2022 Apr 03;23(1):256