Proximity labeling reveals a new in vivo network of interactors for the histone demethylase KDM5.

Matanel Yheskel, Simone Sidoli, Julie Secombe

Epigenetics & chromatin 2023 Feb 18

filter terms:

KDM5 family proteins are multi-domain regulators of transcription that when dysregulated contribute to cancer and intellectual disability. KDM5 proteins can regulate transcription through their histone demethylase activity in addition to demethylase-independent gene regulatory functions that remain less characterized. To expand our understanding of the mechanisms that contribute to KDM5-mediated transcription regulation, we used TurboID proximity labeling to identify KDM5-interacting proteins. Using Drosophila melanogaster, we enriched for biotinylated proteins from KDM5-TurboID-expressing adult heads using a newly generated control for DNA-adjacent background in the form of dCas9:TurboID. Mass spectrometry analyses of biotinylated proteins identified both known and novel candidate KDM5 interactors, including members of the SWI/SNF and NURF chromatin remodeling complexes, the NSL complex, Mediator, and several insulator proteins. Combined, our data shed new light on potential demethylase-independent activities of KDM5. In the context of KDM5 dysregulation, these interactions may play key roles in the alteration of evolutionarily conserved transcriptional programs implicated in human disorders. © 2023. The Author(s).

Citation

Matanel Yheskel, Simone Sidoli, Julie Secombe. Proximity labeling reveals a new in vivo network of interactors for the histone demethylase KDM5. Epigenetics & chromatin. 2023 Feb 18;16(1):8