Modeling by statistical physics and interpretation of the olfactory process of the two enantiomers 3-mercapto-2-methylbutan-1-ol and 3-mercapto-2-methylpentan-1-ol on the OR2M3 human olfactory receptor.

Houda Smati, Yosra Ben Torkia, Ismahene Ben Khemis, Fatma Aouaini, Abdelmottaleb Ben Lamine, Sami Znaidia

International journal of biological macromolecules 2023 Jul 15

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In the present paper, a putative adsorption process of two odorants thiols (3-mercapto-2-methylbutan-1-ol and 3-mercapto-2-methylpentan-1-ol) on the human olfactory receptor OR2M3 has been investigated via advanced models developed by a grand canonical formalism of statistical physics. For the two olfactory systems, a monolayer model with two types of energy (ML2E) has been selected to correlate with the experimental data. The physicochemical analysis of the statistical physics modeling results showed that the adsorption system of the two odorants was multimolecular. Furthermore, the molar adsorption energies were inferior to 22.7 kJ/mol, which confirmed the physisorption process of the adsorption of the two odorant thiols on OR2M3. In addition, quantitative characterizations of both odorants were determined via the olfactory receptor pore size distribution (RPSD) and the adsorption energy distribution (AED), which were spread out from 0.25 to 1.25 nm and from 5 to 35 kJ/mol, respectively. For thermodynamic characterization of the olfactory process, the adsorption entropy indicated the disorder of the adsorption systems of 3-mercapto-2-methylbutan-1-ol and 3-mercapto-2-methylpentan-1-ol on the human olfactory receptor OR2M3. Besides, the used model showed that the presence of copper ions increases the efficacy (olfactory response at saturation) of 3-mercapt-2-methylpentan-1-ol odorant activating OR2M3. The docking molecular simulation indicated that the 3-mercapto-2-methylpentan-1-ol molecule presented more binding affinities (17.15 kJ/mol) with olfactory receptor OR2M3 than 3-mercapto-2-methylbutan-1-ol (14.64 kJ/mol). On the other hand, the two estimated binding affinities of the two odorants belonged to the adsorption energies spectrum (AED) to confirm the physisorption nature of the olfactory adsorption process. Copyright © 2023. Published by Elsevier B.V.

Citation

Houda Smati, Yosra Ben Torkia, Ismahene Ben Khemis, Fatma Aouaini, Abdelmottaleb Ben Lamine, Sami Znaidia. Modeling by statistical physics and interpretation of the olfactory process of the two enantiomers 3-mercapto-2-methylbutan-1-ol and 3-mercapto-2-methylpentan-1-ol on the OR2M3 human olfactory receptor. International journal of biological macromolecules. 2023 Jul 15;243:124896