A disulfide chaperone knockout facilitates spin labeling and pulse EPR spectroscopy of outer membrane transporters.

Viranga W Wimalasiri, Kinga A Jurczak, Monika K Wieliniec, Thushani D Nilaweera, Robert K Nakamoto, David S Cafiso

Protein science : a publication of the Protein Society 2023 Jul

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Pulse EPR measurements provide information on distances and distance distributions in proteins but require the incorporation of pairs of spin labels that are usually attached to engineered cysteine residues. In previous work, we demonstrated that efficient in vivo labeling of the Escherichia coli outer membrane vitamin B12 transporter, BtuB, could only be achieved using strains defective in the periplasmic disulfide bond formation (Dsb) system. Here, we extend these in vivo measurements to FecA, the E. coli ferric citrate transporter. As seen for BtuB, pairs of cysteines cannot be labeled when the protein is present in a standard expression strain. However, incorporating plasmids that permit an arabinose induced expression of FecA into a strain defective in the thiol disulfide oxidoreductase, DsbA, enables efficient spin-labeling and pulse EPR of FecA in cells. A comparison of the measurements made on FecA in cells with measurements made in reconstituted phospholipid bilayers suggests that the cellular environment alters the behavior of the extracellular loops of FecA. In addition to these in situ EPR measurements, the use of a DsbA minus strain for the expression of BtuB improves the EPR signals and pulse EPR data obtained in vitro from BtuB that is labeled, purified, and reconstituted into phospholipid bilayers. The in vitro data also indicate the presence of intermolecular BtuB-BtuB interactions, which had not previously been observed in a reconstituted bilayer system. This result suggests that in vitro EPR measurements on other outer membrane proteins would benefit from protein expression in a DsbA minus strain. © 2023 The Authors. Protein Science published by Wiley Periodicals LLC on behalf of The Protein Society.

Citation

Viranga W Wimalasiri, Kinga A Jurczak, Monika K Wieliniec, Thushani D Nilaweera, Robert K Nakamoto, David S Cafiso. A disulfide chaperone knockout facilitates spin labeling and pulse EPR spectroscopy of outer membrane transporters. Protein science : a publication of the Protein Society. 2023 Jul;32(7):e4704