Ratiometric G-quadruplex/hemin DNAzymes with low-dosage associative substrates.

Rong Lai, Xingli Zeng, Qiuda Xu, Ying Xu, Xueni Li, Yulu Ru, Yilin Wang, Dandan Wang, Xiaoshun Zhou, Yong Shao

Analytica chimica acta 2024 Mar 22

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G-quadruplex (G4)/hemin DNAzymes with conversion of substrates into colorimetric readouts are well recognized as convenient biocatalysis tools in sensor development. However, the previously developed colorimetric G4/hemin DNAzymes are diffusive substrate-based DNAzymes (DSBDs). The current colorimetric DSBDs have several drawbacks including high dosage (∼mM) of diffusive substrates (DSs), colorimetric product toxicity, and single colorimetric readout without tolerance to fluctuation of experimental factors and background. In addition, the usage of high-dosage DSs can smear the G4 foldings and their discard is more harmful to environment. Therefore, exploring alternative DNAzymes with potential to overcome these drawbacks of DSBDs is urgently needed. We herein developed associative substrate-based DNAzymes (ASBDs). Cyanine dyes were selected as associative substrates (ASs) due to their binding competency with G4/hemin DNAzymes. With respect to DSBDs, ASBDs needed only low dosage (∼10 μM) of ASs to be able to cause a rapid and visible substrate conversion. In addition, since cyanine dyes are NIR dyes with high extinction coefficients and their conversion products have absorption bands at shorter wavelength. Therefore, a colorimetric ratio response can be developed to follow activities of G4/hemin DNAzymes with competency to tolerate fluctuation of experimental factors and background. In particular, herein developed ASBDs can endure somewhat concentration fluctuation of H2O2. ASBDs are able to cowork with other enzymes (for example, glucose oxidase) to realize cascade sensing. The developed ASBDs can operate at low dosage of substrates with a colorimetric ratio response and can overcome the drawbacks met in DSBDs. We expect that, by designing ASs with fruitful color panel in the future, our work will inspire more interesting in developing environment-benign and low-carbon G4/hemin DNAzymes and desired colorful high-performance sensors. Copyright © 2024 Elsevier B.V. All rights reserved.

Citation

Rong Lai, Xingli Zeng, Qiuda Xu, Ying Xu, Xueni Li, Yulu Ru, Yilin Wang, Dandan Wang, Xiaoshun Zhou, Yong Shao. Ratiometric G-quadruplex/hemin DNAzymes with low-dosage associative substrates. Analytica chimica acta. 2024 Mar 22;1295:342320