Study on the interaction protein of transcription factor Smad3 based on TurboID proximity labeling technology.

TurboID is a highly efficient biotin-labelling enzyme, which can be used to explore a number of new intercalating proteins due to the very transient binding and catalytic functions of many proteins. TGF-β/Smad3 signaling pathway is involved in many diseases, especially in diabetic nephropathy and inflammation. In this paper, a stably cell line transfected with Smad3 were constructed by using lentiviral infection. To further investigate the function of TGF-β/Smad3, the protein labeling experiment was conducted to find the interacting protein with Smad3 gene. Label-free mass spectrometry analysis was performed to obtain 491 interacting proteins, and the interacting protein hnRNPM was selected for IP and immunofluorescence verification, and it was verified that the Smad3 gene had a certain promoting effect on the expression of hnRNPM gene, and then had an inhibitory effect on IL-6. It lays a foundation for further study of the function of Smad3 gene and its involved regulatory network. Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.

Citation

Biao Yan, Ting Zeng, Xiaoshan Liu, Yuanyuan Guo, Hongguang Chen, Shuang Guo, Wu Liu. Study on the interaction protein of transcription factor Smad3 based on TurboID proximity labeling technology. Genomics. 2024 Mar 26;116(3):110839

PMID: 38537808

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