QuickView for ARID1A;jsessionid=1F7F2CC3FE0387F79CEBF3DAE51E30AC (gene)

Gene Symbol:

ARID1A Homo sapiens

Full name:

AT-rich interaction domain 1A

Synonyms:

B120, BAF250, BAF250a, BM029, C1orf4, CSS2, ELD, MRD14, OSA1, P270, SMARCF1, hELD, hOSA1, AT-rich interactive domain-containing protein 1A, ARID domain-containing protein 1A, AT rich interactive domain 1A (SWI-like), BRG1-associated factor 250a, OSA1 nuclear protein, SWI-like protein, SWI/SNF complex protein p270, SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1, brain protein 120, chromatin remodeling factor p250, osa homolog 1

Genomic Location:

Chr 1: 26895109-26981188

Description:

This gene encodes a member of the SWI/SNF family, whose members have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI, which is required for transcriptional acti...

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This gene encodes a member of the SWI/SNF family, whose members have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI, which is required for transcriptional activation of genes normally repressed by chromatin. It possesses at least two conserved domains that could be important for its function. First, it has a DNA-binding domain that can specifically bind an AT-rich DNA sequence known to be recognized by a SNF/SWI complex at the beta-globin locus. Second, the C-terminus of the protein can stimulate glucocorticoid receptor-dependent transcriptional activation. It is thought that the protein encoded by this gene confers specificity to the SNF/SWI complex and may recruit the complex to its targets through either protein-DNA or protein-protein interactions. Two transcript variants encoding different isoforms have been found for this gene.

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Orthologs:

Mus musculus ,  Rattus norvegicus ,  D. melanogaster ,  Macaca mulatta ,  Gallus gallus ,  Pan troglodytes ,  Canis lupus familiaris ,  Bos taurus ,  Danio rerio

External Links:

Entrez Gene

Transcription Factor
Binding Sites:

TCTGGAC_MIR198 ,  CACTGTG_MIR128A_MIR128B ,  SP1_01 ,  ATAAGCT_MIR21 ,  PU1_Q6 ,  MZF1_01 ,  GGGATGC_MIR3245P ,  MAZ_Q6 ,  EFC_Q6 ,  VDR_Q3 ,  MIF1_01 ,  HOXA4_Q2 ,  SMAD3_Q6 ,  CATTGTYY_SOX9_B1 ,  STAT6_02 ,  TGTGTGA_MIR377 ,  TGAGATT_MIR216 ,  AP2GAMMA_01 ,  RNCTGNYNRNCTGNY_UNKNOWN ,  GTACTGT_MIR101 ,  ATGTACA_MIR493 ,  CTTTGA_LEF1_Q2 ,  AP2ALPHA_01 ,  TCF4_Q5 ,  GGGAGGRR_MAZ_Q6 ,  TGTATGA_MIR4853P ,  LEF1_Q6 ,  LEF1_Q2 ,  TTGGAGA_MIR5155P_MIR519E ,  CATTTCA_MIR203 ,  TEF1_Q6 ,  LFA1_Q6 ,  STAT5B_01 ,  CAGGTG_E12_Q6 ,  AP4_Q6 ,  AGCTCCT_MIR28 ,  AP2_Q6_01 ,  ACCAAAG_MIR9 ,  GTATGAT_MIR154_MIR487 ,  GGCNKCCATNK_UNKNOWN ,  CCCNNGGGAR_OLF1_01 ,  TAATAAT_MIR126 ,  GCM_Q2 ,  GCCNNNWTAAR_UNKNOWN ,  ATACTGT_MIR144 ,  TCTCTCC_MIR185 ,  AP2_Q6 ,  WGGAATGY_TEF1_Q6 ,  AP2REP_01 ,  AAAYRNCTG_UNKNOWN ,  MYOGENIN_Q6 ,  GAGCCAG_MIR149 ,  WTTGKCTG_UNKNOWN ,  PAX5_01 ,  IK1_01 ,  SMAD4_Q6 ,  AGGGCAG_MIR18A ,  CTTTGT_LEF1_Q2 ,  CAGCTG_AP4_Q5 ,  SMAD_Q6 ,  AACTTT_UNKNOWN ,  MZF1_02 ,  TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497 ,  ETF_Q6 ,  GGGNNTTTCC_NFKB_Q6_01 ,  ACACTGG_MIR199A_MIR199B ,  ATGTAGC_MIR221_MIR222 ,  LBP1_Q6

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miRNA binding sites
(Source: TargetScan):

Predicted Gene Targets for miR-101 ,  Predicted Gene Targets for miR-129 ,  Predicted Gene Targets for miR-142-5p ,  Predicted Gene Targets for miR-144 ,  Predicted Gene Targets for miR-185 ,  Predicted Gene Targets for miR-205 ,  Predicted Gene Targets for miR-214 ,  Predicted Gene Targets for miR-216 ,  Predicted Gene Targets for miR-217 ,  Predicted Gene Targets for miR-221 ,  Predicted Gene Targets for miR-30 ,  Predicted Gene Targets for miR-324-5p ,  Predicted Gene Targets for miR-329 ,  Predicted Gene Targets for miR-377 ,  Predicted Gene Targets for miR-382 ,  Predicted Gene Targets for miR-9 ,  Predicted Gene Targets for miR-203 ,  Predicted Gene Targets for miR-31 ,  Predicted Gene Targets for miR-485-3p ,  Predicted Gene Targets for miR-493-5p ,  Predicted Gene Targets for miR-496

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Cytogenetic Map:

1p36.11

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