QuickView for COL13A1 (gene)

Gene Symbol:

COL13A1 Homo sapiens

Full name:

collagen type XIII alpha 1 chain

Synonyms:

CMS19, COLXIIIA1, collagen alpha-1(XIII) chain, collagen, type XIII, alpha 1

Genomic Location:

Chr 10: 71231650-71388909

Description:

This gene encodes the alpha chain of one of the nonfibrillar collagens. The function of this gene product is not known, however, it has been detected at low levels in all connective tissue-producing cells so it may serve a general function in connective tissues. Unlike most of the collagens, which are secreted into the extracellular matrix, collage...

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This gene encodes the alpha chain of one of the nonfibrillar collagens. The function of this gene product is not known, however, it has been detected at low levels in all connective tissue-producing cells so it may serve a general function in connective tissues. Unlike most of the collagens, which are secreted into the extracellular matrix, collagen XIII contains a transmembrane domain and the protein has been localized to the plasma membrane. The transcripts for this gene undergo complex and extensive splicing involving at least eight exons. Like other collagens, collagen XIII is a trimer; it is not known whether this trimer is composed of one or more than one alpha chain isomer. A number of alternatively spliced transcript variants have been described, but the full length nature of some of them has not been determined.

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Orthologs:

Mus musculus ,  Rattus norvegicus ,  Macaca mulatta ,  Danio rerio ,  Pan troglodytes ,  Canis lupus familiaris ,  Bos taurus ,  Gallus gallus

External Links:

Entrez Gene

Transcription Factor
Binding Sites:

SP1_01 ,  FREAC7_01 ,  HNF3ALPHA_Q6 ,  CEBPA_01 ,  FOX_Q2 ,  HFH3_01 ,  POU3F2_01 ,  FOXD3_01 ,  EVI1_04 ,  TGTTTAC_MIR30A5P_MIR30C_MIR30D_MIR30B_MIR30E5P ,  AMEF2_Q6 ,  CTTTGA_LEF1_Q2 ,  CTAWWWATA_RSRFC4_Q2 ,  MEF2_02 ,  TATAAA_TATA_01 ,  CEBP_Q2 ,  RGAANNTTC_HSF1_01 ,  LEF1_Q2 ,  GGGYGTGNY_UNKNOWN ,  MEF2_01 ,  CAGGTG_E12_Q6 ,  HNF3_Q6 ,  HNF3B_01 ,  FOXJ2_01 ,  GTGCCAA_MIR96 ,  HFH4_01 ,  HFH8_01 ,  HSF2_01 ,  HMEF2_Q6 ,  PIT1_Q6 ,  TEF_Q6 ,  TATA_01 ,  E2F_Q2 ,  TBP_01 ,  AACTTT_UNKNOWN ,  HNF6_Q6 ,  GGGTGGRR_PAX4_03 ,  MEF2_Q6_01

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miRNA binding sites
(Source: TargetScan):

Predicted Gene Targets for miR-30 ,  Predicted Gene Targets for miR-377 ,  Predicted Gene Targets for miR-381 ,  Predicted Gene Targets for miR-96 ,  Predicted Gene Targets for miR-182

Cytogenetic Map:

10q22.1

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