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QuickView for retinoblastoma binding protein 2 (gene)


Gene Symbol:
KDM5A Homo sapiens Homo sapiens
Full name:
lysine demethylase 5A
Synonyms:
RBBP-2, RBBP2, RBP2, lysine-specific demethylase 5A, Jumonji, AT rich interactive domain 1A (RBP2-like), histone demethylase JARID1A, jumonji/ARID domain-containing protein 1A, lysine (K)-specific demethylase 5A, retinoblastoma binding protein 2
Genomic Location:
Chr 12: 259484-368881
Description:
This gene encodes a member of the Jumonji, AT-rich interactive domain 1 (JARID1) histone demethylase protein family. The encoded protein plays a role in gene regulation through the histone code by specifically demethylating lysine 4 of histone H3. The encoded protein interacts with many other proteins, including retinoblastoma protein, and is impli...
Orthologs:
Mus musculus Rattus norvegicus D. melanogaster Macaca mulatta Gallus gallus Pan troglodytes Canis lupus familiaris Bos taurus
External Links:
Entrez Gene
Transcription Factor
Binding Sites:
miRNA binding sites
(Source: TargetScan):
Cytogenetic Map:
chr 12
12p13.33


Transcripts Names
NM_001042603
NM_005056
Protein Names
P29375
Q86XZ1
A8MUS2
A8MV76
Q4LE72



GO Molecular Function

sequence-specific DNA binding | histone demethylase activity (H3-dimethyl-K4 specific) | transcription regulatory region DNA binding | RNA polymerase II transcription factor activity, sequence-specific DNA binding | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding | core promoter binding | cation binding | nucleic acid binding | demethylase activity | histone demethylase activity (H3-trimethyl-K4 specific) | methylated histone binding | catalytic activity | chromatin binding | modification-dependent protein binding | DNA binding | sequence-specific double-stranded DNA binding | histone demethylase activity (H3-K4 specific) | histone demethylase activity | ion binding | organic cyclic compound binding | transcription coactivator activity | transcription regulatory region sequence-specific DNA binding | protein binding | zinc ion binding | double-stranded DNA binding | DNA-binding transcription factor activity | chromatin DNA binding | dioxygenase activity | histone binding | transition metal ion binding | core promoter sequence-specific DNA binding | histone demethylase activity (H3-K9 specific) | transcription coregulator activity | metal ion binding | heterocyclic compound binding | oxidoreductase activity

GO Biological Process

RNA metabolic process | transcription by RNA polymerase II | histone demethylase activity (H3-dimethyl-K4 specific) | positive regulation of macromolecule biosynthetic process | developmental process involved in reproduction | gonad development | negative regulation of cellular process | RNA polymerase II transcription factor activity, sequence-specific DNA binding | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding | negative regulation of RNA biosynthetic process | histone modification | male gamete generation | regulation of organelle organization | positive regulation of cellular biosynthetic process | cellular process | circadian regulation of gene expression | chromatin organization | reproductive system development | protein demethylation | multicellular organismal reproductive process | negative regulation of nucleic acid-templated transcription | regulation of histone modification | positive regulation of nitrogen compound metabolic process | negative regulation of cellular metabolic process | gamete generation | regulation of cellular process | regulation of metabolic process | organic cyclic compound metabolic process | RNA biosynthetic process | cellular aromatic compound metabolic process | cellular component organization | development of primary sexual characteristics | demethylase activity | cellular nitrogen compound biosynthetic process | histone demethylase activity (H3-trimethyl-K4 specific) | circadian rhythm | reproduction | regulation of histone deacetylase activity | rhythmic process | cellular nitrogen compound metabolic process | negative regulation of metabolic process | positive regulation of RNA biosynthetic process | protein modification process | cellular biosynthetic process | macromolecule modification | negative regulation of histone deacetylase activity | regulation of nucleic acid-templated transcription | system development | nitrogen compound metabolic process | reproductive process | multicellular organism development | negative regulation of catalytic activity | regulation of catalytic activity | regulation of gene expression | positive regulation of cellular metabolic process | regulation of nitrogen compound metabolic process | regulation of transcription by RNA polymerase II | histone demethylase activity (H3-K4 specific) | histone demethylase activity | biosynthetic process | regulation of cellular protein metabolic process | aromatic compound biosynthetic process | regulation of cellular metabolic process | regulation of protein deacetylation | regulation of protein metabolic process | transcription coactivator activity | regulation of RNA metabolic process | multicellular organism reproduction | development of primary male sexual characteristics | histone demethylation | protein metabolic process | DNA-binding transcription factor activity | male sex differentiation | negative regulation of histone deacetylation | regulation of DNA-binding transcription factor activity | anatomical structure development | metabolic process | regulation of RNA biosynthetic process | histone H3-K4 demethylation | oxidation-reduction process | negative regulation of transcription, DNA-templated | male gonad development | nucleobase-containing compound metabolic process | organic substance metabolic process | negative regulation of biosynthetic process | negative regulation of gene expression | animal organ development | negative regulation of cellular protein metabolic process | gene expression | dioxygenase activity | regulation of chromosome organization | transcription, DNA-templated | histone H3-K4 demethylation, trimethyl-H3-K4-specific | negative regulation of protein metabolic process | negative regulation of chromosome organization | negative regulation of molecular function | covalent chromatin modification | regulation of transcription, DNA-templated | cellular protein metabolic process | cellular macromolecule biosynthetic process | histone lysine demethylation | histone demethylase activity (H3-K9 specific) | reproductive structure development | developmental process | organelle organization | spermatogenesis | cellular protein modification process | negative regulation of transcription by RNA polymerase II | positive regulation of transcription, DNA-templated | histone H3-K9 demethylation | positive regulation of nucleic acid-templated transcription | transcription coregulator activity | heterocycle metabolic process | negative regulation of hydrolase activity | demethylation | regulation of histone deacetylation | positive regulation of metabolic process | chromosome organization | cellular metabolic process | sex differentiation | oxidoreductase activity | sexual reproduction | regulation of cellular component organization | positive regulation of gene expression | macromolecule metabolic process | multicellular organismal process | regulation of chromatin organization

GO Cellular Component

intracellular membrane-bounded organelle | catalytic complex | protein kinase complex | cell | nuclear lumen | nucleolus | intracellular organelle | histone methyltransferase complex | carboxy-terminal domain protein kinase complex | protein-containing complex | methyltransferase complex | protein-DNA complex | nucleoplasm | nuclear cyclin-dependent protein kinase holoenzyme complex | transferase complex | serine/threonine protein kinase complex | membrane-bounded organelle | nucleus | organelle | membrane-enclosed lumen | cyclin-dependent protein kinase holoenzyme complex | intracellular | cyclin-dependent protein kinase activating kinase holoenzyme complex