BaseSpace
Correlation
Engine-Public
Sign In
Register
Correlation Engine 2.0
Home
My Data
Bookmarks
Collaborations
Inbox
Import Your Data
QuickView
FAQ
What is QuickView?
What can my QuickView results tell me?
What are the sources for the General Info tab in QuickView?
More QuickView FAQs
Back to top
QuickView
Curated
Studies
Body
Atlas
Disease
Atlas
Pharmaco
Atlas
Knockdown
Atlas
Genetic
Markers
Pathway
Enrichment
Literature
Clinical
Trials
0
Meta-
Analysis
QuickView
Search sequence regions
(e.g.
IGF1
,
calcium channel activity
,
Allergy to pollen
,
Lung
,
DNA fingerprint
,
Lovastatin
)
Organisms
Chromosomes
Start
Stop
Homo Sapiens
Mus Musculus
Rattus Norvegicus
C. Elegans
D. Melanogaster
Saccharomyces Cerevisiae
QuickView
Go back to main search
Bookmark
Forward
Export Results
QuickView
for
rs11176057;jsessionid=F837B4053F3679896614D4D9C45B48FE
(snp)
Summary
General Info
Macaque
C
Human
A
|
C
Chimp
C
Mouse
-
Rat
-
Type:
snp
Organism:
Homo sapiens
Alleles:
A
|
C
Chromosomal Location:
chr 12
:
64823550 (build 36.3)
Strand:
+
Flanking Sequence:
GTTTAACAA [
A
|
C
] TGACTTGCAAG
Update Date:
May 26 2008
Validated:
YES
Associated Gene(s):
TMBIM4
Related URLs:
NCBI dbSNP
Associated Genes
Population
Correlated SNP
TMBIM4 (promoter / exon)
Transcript
CDS Change
Protein
Mutation Class
AA Change
XM_001726455
G75T
XP_001726507
Missense
Q25H
Population Frequency
Population
Alleles
Genotypes
African ancestry in Southwest, USA (ASW)
C
92%
A
9%
C/C
83%
A
/C
17%
A/A
0%
Utah residents with Northern and Western European ancestry from the CEPH collection (CEU)
C
85%
A
15%
C/C
72%
A
/C
27%
A/A
2%
Han Chinese in Beijing, China (CHB)
C
91%
A
10%
C/C
82%
A
/C
17%
A/A
1%
Chinese in Metropolitan Denver, Colorado (CHD)
C
85%
A
15%
C/C
72%
A
/C
27%
A/A
1%
Gujarati Indians in Houston, Texas (GIH)
C
78%
A
22%
C/C
61%
A
/C
34%
A/A
5%
Japanese in Tokyo, Japan (JPT)
C
94%
A
6%
C/C
88%
A
/C
11%
A/A
1%
Luhya in Webuye, Kenya (LWK)
C
97%
A
3%
C/C
93%
A
/C
7%
A/A
0%
Mexican ancestry in Los Angeles, California (MEX)
C
57%
A
43%
C/C
28%
A
/C
58%
A/A
14%
Maasai in Kinyawa, Kenya (MKK)
C
96%
A
4%
C/C
92%
A
/C
8%
A/A
0%
Toscans in Italy (TSI)
C
81%
A
19%
C/C
63%
A
/C
36%
A/A
1%
Yoruba in Ibadan, Nigeria (YRI)
C
97%
A
3%
C/C
95%
A
/C
5%
A/A
0%
Global or other
C
88%
A
12%
SNPs correlated to rs11176057;jsessionid=F837B4053F3679896614D4D9C45B48FE for population
Global
African ancestry in Southwest, USA
Chinese in Metropolitan Denver, Colorado
Gujarati Indians in Houston, Texas
Han Chinese in Beijing, China
Japanese in Tokyo, Japan
Luhya in Webuye, Kenya
Maasai in Kinyawa, Kenya
Mexican ancestry in Los Angeles, California
Toscans in Italy
Utah residents with Northern and Western European ancestry
Yoruba in Ibadan, Nigeria
Clear Filter
No correlated SNPs found.
search
→
result
search
→
result
See more about this page
See complete FAQ