BaseSpace
Correlation
Engine-Public
Sign In
Register
Correlation Engine 2.0
Home
My Data
Bookmarks
Collaborations
Inbox
Import Your Data
QuickView
FAQ
What is QuickView?
What can my QuickView results tell me?
What are the sources for the General Info tab in QuickView?
More QuickView FAQs
Back to top
QuickView
Curated
Studies
Body
Atlas
Disease
Atlas
Pharmaco
Atlas
Knockdown
Atlas
Genetic
Markers
Pathway
Enrichment
Literature
Clinical
Trials
0
Meta-
Analysis
QuickView
Search sequence regions
(e.g.
G-protein-coupled receptor binding
,
Lung cancer
,
Intestine
,
Neocentromeres
,
SNCA
)
Organisms
Chromosomes
Start
Stop
Homo Sapiens
Mus Musculus
Rattus Norvegicus
C. Elegans
D. Melanogaster
Saccharomyces Cerevisiae
QuickView
Go back to main search
Bookmark
Forward
Export Results
QuickView
for
rs12091951;jsessionid=527A15CE425BC6C6626F61F5E1F1F645
(snp)
Summary
General Info
Macaque
G
Human
A
|
G
Chimp
G
Mouse
A
Rat
-
Type:
snp
Organism:
Homo sapiens
Alleles:
A
|
G
Chromosomal Location:
chr 1
:
48872758 (build 36.3)
Strand:
+
Flanking Sequence:
TACTGGGTC [
A
|
G
] TTGTACATCTG
Update Date:
May 23 2008
Validated:
YES
Associated Gene(s):
AGBL4
Related URLs:
NCBI dbSNP
Associated Genes
Population
Correlated SNP
AGBL4 (exon)
Transcript
CDS Change
Protein
Mutation Class
AA Change
NM_032785
C390T
NP_116174
Synonymous
N130N
Population Frequency
Population
Alleles
Genotypes
African ancestry in Southwest, USA (ASW)
G
92%
A
9%
G/G
83%
A
/G
17%
A/A
0%
Utah residents with Northern and Western European ancestry from the CEPH collection (CEU)
G
100%
A
0%
G/G
100%
A
/G
0%
A/A
0%
Han Chinese in Beijing, China (CHB)
G
100%
A
0%
G/G
100%
A
/G
0%
A/A
0%
Japanese in Tokyo, Japan (JPT)
G
100%
A
0%
G/G
100%
A
/G
0%
A/A
0%
Luhya in Webuye, Kenya (LWK)
G
96%
A
5%
G/G
92%
A
/G
7%
A/A
1%
Maasai in Kinyawa, Kenya (MKK)
G
99%
A
1%
G/G
99%
A
/G
1%
A/A
0%
Yoruba in Ibadan, Nigeria (YRI)
G
89%
A
11%
G/G
80%
A
/G
19%
A/A
2%
Global or other
G
96%
A
4%
SNPs correlated to rs12091951;jsessionid=527A15CE425BC6C6626F61F5E1F1F645 for population
Global
African ancestry in Southwest, USA
Chinese in Metropolitan Denver, Colorado
Gujarati Indians in Houston, Texas
Han Chinese in Beijing, China
Japanese in Tokyo, Japan
Luhya in Webuye, Kenya
Maasai in Kinyawa, Kenya
Mexican ancestry in Los Angeles, California
Toscans in Italy
Utah residents with Northern and Western European ancestry
Yoruba in Ibadan, Nigeria
Clear Filter
No correlated SNPs found.
search
→
result
search
→
result
See more about this page
See complete FAQ