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for
rs15524
(snp)
Summary
General Info
Macaque
C
Human
C
|
T
Chimp
C
Mouse
C
Rat
C
Type:
snp
Organism:
Homo sapiens
Alleles:
C
|
T
Chromosomal Location:
chr 7
:
99083850 (build 36.3)
Strand:
-
Flanking Sequence:
TTCTAAGGA [
C
|
T
] TTCTACTTTGG
Update Date:
May 25 2008
Validated:
YES
Associated Gene(s):
CYP3A
,
CYP3A5
Related URLs:
NCBI dbSNP
Associated Genes
Population
Correlated SNP
CYP3A (gene without tx info)
Transcript
CDS Change
Protein
Mutation Class
AA Change
-
-
-
-
-
CYP3A5 (UTR)
Transcript
CDS Change
Protein
Mutation Class
AA Change
NM_000777
-
-
-
-
Population Frequency
Population
Alleles
Genotypes
African ancestry in Southwest, USA (ASW)
T
45%
C
55%
T/T
17%
T
/C
57%
C/C
26%
Utah residents with Northern and Western European ancestry from the CEPH collection (CEU)
T
96%
C
4%
T/T
92%
T
/C
8%
C/C
0%
Han Chinese in Beijing, China (CHB)
T
69%
C
31%
T/T
49%
T
/C
41%
C/C
11%
Chinese in Metropolitan Denver, Colorado (CHD)
T
75%
C
25%
T/T
55%
T
/C
40%
C/C
5%
Gujarati Indians in Houston, Texas (GIH)
T
75%
C
25%
T/T
56%
T
/C
38%
C/C
6%
Japanese in Tokyo, Japan (JPT)
T
72%
C
28%
T/T
49%
T
/C
45%
C/C
6%
Luhya in Webuye, Kenya (LWK)
T
29%
C
71%
T/T
7%
T
/C
44%
C/C
49%
Mexican ancestry in Los Angeles, California (MEX)
T
75%
C
25%
T/T
54%
T
/C
42%
C/C
4%
Maasai in Kinyawa, Kenya (MKK)
T
58%
C
42%
T/T
33%
T
/C
50%
C/C
18%
Toscans in Italy (TSI)
T
95%
C
5%
T/T
90%
T
/C
10%
C/C
0%
Yoruba in Ibadan, Nigeria (YRI)
T
27%
C
73%
T/T
7%
T
/C
41%
C/C
52%
Global or other
T
66%
C
35%
SNPs correlated to rs15524 for population
Global
African ancestry in Southwest, USA
Chinese in Metropolitan Denver, Colorado
Gujarati Indians in Houston, Texas
Han Chinese in Beijing, China
Japanese in Tokyo, Japan
Luhya in Webuye, Kenya
Maasai in Kinyawa, Kenya
Mexican ancestry in Los Angeles, California
Toscans in Italy
Utah residents with Northern and Western European ancestry
Yoruba in Ibadan, Nigeria
Clear Filter
SNP
r
2
Maximum Recombination Rate
Distance (bp)
Genetic Distance (cM)
rs3735453
0.889
0.2329
16479.0
0.0012
rs7808022
0.828
0.2329
25831.0
0.0019
rs1859690
0.828
0.2329
18742.0
0.0013
rs10282706
0.741
0.2329
28490.0
0.0022
rs2740565
0.504
0.3956
47561.0
0.0054
rs2687087
0.504
0.3956
48558.0
0.0054
rs1879859
0.504
0.3956
48848.0
0.0054
rs2687079
0.504
0.3956
58704.0
0.0054
rs2687076
0.504
0.3956
61354.0
0.0061
rs2222411
0.504
0.3956
64417.0
0.0061
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