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for
rs7167936;jsessionid=AB5EEC26FE16946EFC9A7CCBD75E9825
(snp)
Summary
General Info
Macaque
A
Human
A
|
G
Chimp
A
Mouse
-
Rat
-
Type:
snp
Organism:
Homo sapiens
Alleles:
A
|
G
Chromosomal Location:
chr 15
:
49286837 (build 36.3)
Strand:
+
Flanking Sequence:
TCATGCCCT [
A
|
G
] TGCTCAGTGAG
Update Date:
May 24 2008
Validated:
YES
Associated Gene(s):
CYP19A1
Related URLs:
NCBI dbSNP
Associated Genes
Population
Correlated SNP
CYP19A1 (intergenic)
Transcript
CDS Change
Protein
Mutation Class
AA Change
-
-
-
-
-
Population Frequency
Population
Alleles
Genotypes
African ancestry in Southwest, USA (ASW)
A
78%
G
22%
A/A
64%
A
/G
28%
G/G
8%
Utah residents with Northern and Western European ancestry from the CEPH collection (CEU)
A
43%
G
57%
A/A
19%
A
/G
48%
G/G
34%
Han Chinese in Beijing, China (CHB)
A
42%
G
58%
A/A
13%
A
/G
58%
G/G
29%
Chinese in Metropolitan Denver, Colorado (CHD)
A
48%
G
52%
A/A
24%
A
/G
48%
G/G
28%
Gujarati Indians in Houston, Texas (GIH)
A
61%
G
39%
A/A
39%
A
/G
46%
G/G
16%
Japanese in Tokyo, Japan (JPT)
A
54%
G
46%
A/A
28%
A
/G
52%
G/G
20%
Luhya in Webuye, Kenya (LWK)
A
77%
G
23%
A/A
58%
A
/G
39%
G/G
3%
Mexican ancestry in Los Angeles, California (MEX)
A
60%
G
40%
A/A
34%
A
/G
52%
G/G
14%
Maasai in Kinyawa, Kenya (MKK)
A
59%
G
41%
A/A
34%
A
/G
50%
G/G
16%
Toscans in Italy (TSI)
A
51%
G
49%
A/A
31%
A
/G
40%
G/G
30%
Yoruba in Ibadan, Nigeria (YRI)
A
83%
G
17%
A/A
67%
A
/G
32%
G/G
1%
Global or other
A
59%
G
41%
SNPs correlated to rs7167936;jsessionid=AB5EEC26FE16946EFC9A7CCBD75E9825 for population
Global
African ancestry in Southwest, USA
Chinese in Metropolitan Denver, Colorado
Gujarati Indians in Houston, Texas
Han Chinese in Beijing, China
Japanese in Tokyo, Japan
Luhya in Webuye, Kenya
Maasai in Kinyawa, Kenya
Mexican ancestry in Los Angeles, California
Toscans in Italy
Utah residents with Northern and Western European ancestry
Yoruba in Ibadan, Nigeria
Clear Filter
SNP
r
2
Maximum Recombination Rate
Distance (bp)
Genetic Distance (cM)
rs8029120
0.9
4.6128
5389.0
0.0029
rs1065779
0.9
4.6128
5266.0
0.0029
rs10046
0.829
4.6128
3441.0
0.0018
rs4774583
0.692
4.6128
6448.0
0.004
rs3784307
0.692
4.6128
7089.0
0.0041
rs2289105
0.635
4.6128
7963.0
0.0042
rs2304463
0.635
4.6128
8575.0
0.0043
rs6493489
0.628
4.6128
14658.0
0.0058
rs8034835
0.612
4.6128
13119.0
0.0056
rs8023263
0.556
4.6128
18052.0
0.007
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