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for
rs8029120;jsessionid=9083715B9F2B56868F8C6856137429EC
(snp)
Summary
General Info
Macaque
T
Human
G
|
T
Chimp
T
Mouse
G
Rat
G
Type:
snp
Organism:
Homo sapiens
Alleles:
G
|
T
Chromosomal Location:
chr 15
:
49292226 (build 36.3)
Strand:
+
Flanking Sequence:
GCCACAGAG [
G
|
T
] GTTTTATAAAA
Update Date:
May 26 2008
Validated:
YES
Associated Gene(s):
CYP19A1
Related URLs:
NCBI dbSNP
Associated Genes
Population
Correlated SNP
CYP19A1 (intron)
Transcript
CDS Change
Protein
Mutation Class
AA Change
-
-
-
-
-
Population Frequency
Population
Alleles
Genotypes
African ancestry in Southwest, USA (ASW)
T
77%
G
23%
T/T
62%
G
/T
30%
G/G
8%
Utah residents with Northern and Western European ancestry from the CEPH collection (CEU)
T
42%
G
58%
T/T
19%
G
/T
47%
G/G
34%
Han Chinese in Beijing, China (CHB)
T
42%
G
58%
T/T
13%
G
/T
58%
G/G
29%
Chinese in Metropolitan Denver, Colorado (CHD)
T
48%
G
52%
T/T
24%
G
/T
48%
G/G
28%
Gujarati Indians in Houston, Texas (GIH)
T
59%
G
41%
T/T
35%
G
/T
48%
G/G
17%
Japanese in Tokyo, Japan (JPT)
T
53%
G
47%
T/T
27%
G
/T
51%
G/G
21%
Luhya in Webuye, Kenya (LWK)
T
77%
G
23%
T/T
58%
G
/T
39%
G/G
3%
Mexican ancestry in Los Angeles, California (MEX)
T
61%
G
39%
T/T
34%
G
/T
54%
G/G
12%
Maasai in Kinyawa, Kenya (MKK)
T
59%
G
42%
T/T
33%
G
/T
51%
G/G
16%
Toscans in Italy (TSI)
T
52%
G
48%
T/T
31%
G
/T
41%
G/G
28%
Yoruba in Ibadan, Nigeria (YRI)
T
82%
G
18%
T/T
66%
G
/T
33%
G/G
2%
Global or other
T
59%
G
42%
SNPs correlated to rs8029120;jsessionid=9083715B9F2B56868F8C6856137429EC for population
Global
African ancestry in Southwest, USA
Chinese in Metropolitan Denver, Colorado
Gujarati Indians in Houston, Texas
Han Chinese in Beijing, China
Japanese in Tokyo, Japan
Luhya in Webuye, Kenya
Maasai in Kinyawa, Kenya
Mexican ancestry in Los Angeles, California
Toscans in Italy
Utah residents with Northern and Western European ancestry
Yoruba in Ibadan, Nigeria
Clear Filter
SNP
r
2
Maximum Recombination Rate
Distance (bp)
Genetic Distance (cM)
rs1065779
0.946
1.0375
123.0
0.0
rs7167936
0.9
4.6128
5389.0
0.0029
rs10046
0.748
1.0375
1948.0
0.0011
rs4774583
0.738
1.0375
1059.0
0.0011
rs3784307
0.738
1.0375
1700.0
0.0012
rs8034835
0.667
1.0375
7730.0
0.0027
rs6493489
0.667
1.0375
9269.0
0.0029
rs2289105
0.635
1.0375
2574.0
0.0013
rs2304463
0.635
1.0375
3186.0
0.0014
rs8023263
0.635
1.0375
12663.0
0.0041
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