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for
rs9938550
(snp)
Summary
General Info
Macaque
G
Human
A
|
G
Chimp
G
Mouse
G
Rat
G
Type:
snp
Organism:
Homo sapiens
Alleles:
A
|
G
Chromosomal Location:
chr 16
:
30906643 (build 36.3)
Strand:
+
Flanking Sequence:
CAGCGGGCA [
A
|
G
] CCCTGATGGGC
Update Date:
May 24 2008
Validated:
YES
Associated Gene(s):
STX1B
,
SETD1A
,
HSD3B7
Related URLs:
NCBI dbSNP
Associated Genes
Population
Correlated SNP
STX1B (intergenic)
Transcript
CDS Change
Protein
Mutation Class
AA Change
-
-
-
-
-
SETD1A (intergenic)
Transcript
CDS Change
Protein
Mutation Class
AA Change
-
-
-
-
-
HSD3B7 (exon)
Transcript
CDS Change
Protein
Mutation Class
AA Change
NM_025193
A748G
NP_079469
Missense
T250A
Population Frequency
Population
Alleles
Genotypes
African ancestry in Southwest, USA (ASW)
A
69%
G
31%
A/A
43%
A
/G
51%
G/G
6%
Utah residents with Northern and Western European ancestry from the CEPH collection (CEU)
A
36%
G
64%
A/A
12%
A
/G
49%
G/G
39%
Han Chinese in Beijing, China (CHB)
A
5%
G
95%
A/A
0%
A
/G
10%
G/G
90%
Chinese in Metropolitan Denver, Colorado (CHD)
A
8%
G
92%
A/A
0%
A
/G
16%
G/G
85%
Gujarati Indians in Houston, Texas (GIH)
A
67%
G
34%
A/A
36%
A
/G
60%
G/G
3%
Japanese in Tokyo, Japan (JPT)
A
13%
G
87%
A/A
1%
A
/G
23%
G/G
76%
Luhya in Webuye, Kenya (LWK)
A
73%
G
27%
A/A
56%
A
/G
34%
G/G
10%
Mexican ancestry in Los Angeles, California (MEX)
A
38%
G
62%
A/A
10%
A
/G
55%
G/G
35%
Maasai in Kinyawa, Kenya (MKK)
A
66%
G
34%
A/A
43%
A
/G
46%
G/G
11%
Toscans in Italy (TSI)
A
33%
G
67%
A/A
9%
A
/G
48%
G/G
43%
Yoruba in Ibadan, Nigeria (YRI)
A
82%
G
18%
A/A
65%
A
/G
34%
G/G
1%
Global or other
A
50%
G
50%
SNPs correlated to rs9938550 for population
Global
African ancestry in Southwest, USA
Chinese in Metropolitan Denver, Colorado
Gujarati Indians in Houston, Texas
Han Chinese in Beijing, China
Japanese in Tokyo, Japan
Luhya in Webuye, Kenya
Maasai in Kinyawa, Kenya
Mexican ancestry in Los Angeles, California
Toscans in Italy
Utah residents with Northern and Western European ancestry
Yoruba in Ibadan, Nigeria
Clear Filter
SNP
r
2
Maximum Recombination Rate
Distance (bp)
Genetic Distance (cM)
rs12930545
0.852
0.0837
60331.0
0.0018
rs11150601
0.852
0.0021
21343.0
1.0E-4
rs4889525
0.828
0.0021
9284.0
0.0
rs2305880
0.828
0.0022
320.0
0.0
rs11150600
0.705
0.0837
58811.0
0.0016
rs12928852
0.705
0.0837
55154.0
0.0013
rs10782002
0.705
0.0837
52636.0
0.0013
rs11640534
0.705
0.0837
49627.0
0.0013
rs12931046
0.705
0.0021
11998.0
0.0
rs3813020
0.705
0.1269
65067.0
0.0023
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