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for
rs16969968
(snp)
Summary
General Info
Macaque
G
Human
A
|
G
Chimp
G
Mouse
G
Rat
G
Type:
snp
Organism:
Homo sapiens
Alleles:
A
|
G
Chromosomal Location:
chr 15
:
76669980 (build 36.3)
Strand:
+
Flanking Sequence:
GCTGCGCTC [
A
|
G
] ATTCTATTCGC
Update Date:
Apr 03 2008
Validated:
YES
Associated Gene(s):
CHRNA3
,
CHRNA5
Related URLs:
NCBI dbSNP
Associated Genes
Population
Correlated SNP
CHRNA3 (intergenic)
Transcript
CDS Change
Protein
Mutation Class
AA Change
-
-
-
-
-
CHRNA5 (exon)
Transcript
CDS Change
Protein
Mutation Class
AA Change
NM_000745
G1192A
NP_000736
Missense
D398N
Population Frequency
Population
Alleles
Genotypes
Global or other
G
77%
A
23%
African ancestry in Southwest, USA (ASW)
G
93%
A
8%
G/G
87%
A
/G
11%
A/A
2%
Utah residents with Northern and Western European ancestry from the CEPH collection (CEU)
G
62%
A
39%
G/G
39%
A
/G
45%
A/A
16%
Han Chinese in Beijing, China (CHB)
G
96%
A
4%
G/G
93%
A
/G
7%
A/A
0%
Chinese in Metropolitan Denver, Colorado (CHD)
G
97%
A
3%
G/G
94%
A
/G
6%
A/A
0%
Gujarati Indians in Houston, Texas (GIH)
G
79%
A
21%
G/G
65%
A
/G
28%
A/A
7%
Japanese in Tokyo, Japan (JPT)
G
99%
A
1%
G/G
98%
A
/G
2%
A/A
0%
Mexican ancestry in Los Angeles, California (MEX)
G
76%
A
24%
G/G
58%
A
/G
36%
A/A
6%
Maasai in Kinyawa, Kenya (MKK)
G
91%
A
9%
G/G
82%
A
/G
18%
A/A
1%
Toscans in Italy (TSI)
G
59%
A
42%
G/G
38%
A
/G
42%
A/A
21%
Yoruba in Ibadan, Nigeria (YRI)
G
100%
A
0%
G/G
100%
A
/G
0%
A/A
0%
SNPs correlated to rs16969968 for population
Global
African ancestry in Southwest, USA
Chinese in Metropolitan Denver, Colorado
Gujarati Indians in Houston, Texas
Han Chinese in Beijing, China
Japanese in Tokyo, Japan
Luhya in Webuye, Kenya
Maasai in Kinyawa, Kenya
Mexican ancestry in Los Angeles, California
Toscans in Italy
Utah residents with Northern and Western European ancestry
Yoruba in Ibadan, Nigeria
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