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for
rs6493489;jsessionid=A465F9C9A26798719151FE1991FA124B
(snp)
Summary
General Info
Macaque
T
Human
C
|
T
Chimp
T
Mouse
T
Rat
T
Type:
snp
Organism:
Homo sapiens
Alleles:
C
|
T
Chromosomal Location:
chr 15
:
49301495 (build 36.3)
Strand:
+
Flanking Sequence:
AAAGAACAA [
C
|
T
] TGGAAATGGTT
Update Date:
May 25 2008
Validated:
YES
Associated Gene(s):
CYP19A1
Related URLs:
NCBI dbSNP
Associated Genes
Population
Correlated SNP
CYP19A1 (intron)
Transcript
CDS Change
Protein
Mutation Class
AA Change
-
-
-
-
-
Population Frequency
Population
Alleles
Genotypes
African ancestry in Southwest, USA (ASW)
C
79%
T
21%
C/C
64%
C
/T
30%
T/T
6%
Utah residents with Northern and Western European ancestry from the CEPH collection (CEU)
C
43%
T
57%
C/C
19%
C
/T
48%
T/T
34%
Han Chinese in Beijing, China (CHB)
C
41%
T
60%
C/C
13%
C
/T
55%
T/T
32%
Chinese in Metropolitan Denver, Colorado (CHD)
C
49%
T
51%
C/C
26%
C
/T
46%
T/T
28%
Gujarati Indians in Houston, Texas (GIH)
C
60%
T
40%
C/C
35%
C
/T
49%
T/T
16%
Japanese in Tokyo, Japan (JPT)
C
54%
T
46%
C/C
29%
C
/T
50%
T/T
21%
Luhya in Webuye, Kenya (LWK)
C
81%
T
19%
C/C
66%
C
/T
29%
T/T
5%
Mexican ancestry in Los Angeles, California (MEX)
C
60%
T
40%
C/C
34%
C
/T
51%
T/T
15%
Maasai in Kinyawa, Kenya (MKK)
C
65%
T
35%
C/C
43%
C
/T
44%
T/T
13%
Toscans in Italy (TSI)
C
51%
T
49%
C/C
30%
C
/T
43%
T/T
27%
Yoruba in Ibadan, Nigeria (YRI)
C
84%
T
16%
C/C
69%
C
/T
30%
T/T
1%
SNPs correlated to rs6493489;jsessionid=A465F9C9A26798719151FE1991FA124B for population
Global
African ancestry in Southwest, USA
Chinese in Metropolitan Denver, Colorado
Gujarati Indians in Houston, Texas
Han Chinese in Beijing, China
Japanese in Tokyo, Japan
Luhya in Webuye, Kenya
Maasai in Kinyawa, Kenya
Mexican ancestry in Los Angeles, California
Toscans in Italy
Utah residents with Northern and Western European ancestry
Yoruba in Ibadan, Nigeria
Clear Filter
SNP
r
2
Maximum Recombination Rate
Distance (bp)
Genetic Distance (cM)
rs8034835
0.949
0.2021
1539.0
2.0E-4
rs4774583
0.887
0.4086
8210.0
0.0018
rs3784307
0.887
0.4086
7569.0
0.0017
rs2289105
0.887
0.4086
6695.0
0.0016
rs2304463
0.887
0.4086
6083.0
0.0015
rs4324076
0.855
0.2021
3335.0
4.0E-4
rs8023263
0.812
0.6616
3394.0
0.0012
rs8029120
0.667
1.0375
9269.0
0.0029
rs1065779
0.667
1.0375
9392.0
0.0029
rs1065778
0.631
1.4877
6003.0
0.0029
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